Package index • ramr

All functions

getAMR(): Search for aberrantly methylated regions

getUniverse(): Merges, filters and outputs all genomic regions of a given `GRanges` object

plotAMR(): Plot aberrantly methylated regions

ramr: Simulated Illumina HumanMethylation 450k data set with 3000 CpGs and 100 samples

simulateAMR(): Simulate a set of aberrantly methylated regions

simulateData(): Template-based simulation of methylation data sets