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All functions

callMethylation()
callMethylation
extractPatterns()
extractPatterns
generateBedEcdf()
generateBedEcdf
generateAmpliconReport() generateCaptureReport() generateBedReport()
generateBedReport
generateCytosineReport()
generateCytosineReport
generateMhlReport()
generateMhlReport
generateVcfReport()
generateVcfReport
plotPatterns()
plotPatterns
preprocessBam()
preprocessBam
preprocessGenome()
preprocessGenome
simulateBam()
simulateBam